Package: SeuratExplorer 0.1.0
SeuratExplorer: An 'Shiny' App for Exploring scRNA-seq Data Processed in 'Seurat'
A simple, one-command package which runs an interactive dashboard capable of common visualizations for single cell RNA-seq. 'SeuratExplorer' requires a processed 'Seurat' object, which is saved as 'rds' or 'qs2' file.
Authors:
SeuratExplorer_0.1.0.tar.gz
SeuratExplorer_0.1.0.zip(r-4.5)SeuratExplorer_0.1.0.zip(r-4.4)SeuratExplorer_0.1.0.zip(r-4.3)
SeuratExplorer_0.1.0.tgz(r-4.5-any)SeuratExplorer_0.1.0.tgz(r-4.4-any)SeuratExplorer_0.1.0.tgz(r-4.3-any)
SeuratExplorer_0.1.0.tar.gz(r-4.5-noble)SeuratExplorer_0.1.0.tar.gz(r-4.4-noble)
SeuratExplorer_0.1.0.tgz(r-4.4-emscripten)
SeuratExplorer.pdf |SeuratExplorer.html✨
SeuratExplorer/json (API)
# Install 'SeuratExplorer' in R: |
install.packages('SeuratExplorer', repos = c('https://fentouxungui.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/fentouxungui/seuratexplorer/issues
Last updated 1 days agofrom:b405227a17. Checks:9 OK. Indexed: yes.
Target | Result | Latest binary |
---|---|---|
Doc / Vignettes | OK | Mar 14 2025 |
R-4.5-win | OK | Mar 14 2025 |
R-4.5-mac | OK | Mar 14 2025 |
R-4.5-linux | OK | Mar 14 2025 |
R-4.4-win | OK | Mar 14 2025 |
R-4.4-mac | OK | Mar 14 2025 |
R-4.4-linux | OK | Mar 14 2025 |
R-4.3-win | OK | Mar 14 2025 |
R-4.3-mac | OK | Mar 14 2025 |
Exports:cellRatioPlotexplorer_body_uiexplorer_serverexplorer_sidebar_uigetColorslaunchSeuratExplorerservertop_genesui
Dependencies:abindaskpassbase64encBHBiocGenericsbitopsbslibcachemcaToolscirclizecliclueclustercodetoolscolorspacecolourpickercommonmarkComplexHeatmapcowplotcpp11crayoncrosstalkcurldata.tabledeldirdigestdoParalleldotCall64dplyrdqrngDTevaluatefansifarverfastDummiesfastmapfitdistrplusFNNfontawesomeforeachfsfuturefuture.applygenericsGetoptLongggalluvialggplot2ggrepelggridgesGlobalOptionsglobalsgluegoftestgplotsgridExtragtablegtoolsherehighrhtmltoolshtmlwidgetshttpuvhttricaigraphIRangesirlbaisobanditeratorsjquerylibjsonliteKernSmoothknitrlabelinglaterlatticelazyevalleidenbaselifecyclelistenvlmtestmagrittrMASSMatrixmatrixStatsmemoisemgcvmimeminiUImunsellnlmeopensslparallellypatchworkpbapplypillarpkgconfigplotlyplyrpngpolyclipprogressrpromisespurrrqs2R6RANNrappdirsRColorBrewerRcppRcppAnnoyRcppArmadilloRcppEigenRcppHNSWRcppParallelRcppProgressRcppTOMLreshape2reticulaterjsonrlangrmarkdownROCRrprojrootRSpectraRtsneS4VectorssassscalesscattermoresctransformSeuratSeuratObjectshapeshinyshinyBSshinycssloadersshinydashboardshinyjquishinyjsshinyWidgetssitmosourcetoolsspspamspatstat.dataspatstat.explorespatstat.geomspatstat.randomspatstat.sparsespatstat.univarspatstat.utilsstringfishstringistringrsurvivalsystensortibbletidyrtidyselecttinytexutf8uwotvctrsviridisLitewithrxfunxtableyamlzoo
Readme and manuals
Help Manual
Help page | Topics |
---|---|
plot cell percentage barplot | cellRatioPlot |
generate the body UI for each menu item specified in 'explorer_sidebar_ui' | explorer_body_ui |
server side functions related to 'explorer_sidebar_ui' | explorer_server |
some menu items of the dashboard sidebar | explorer_sidebar_ui |
getColors | getColors |
Launch shiny app | launchSeuratExplorer |
Server | server |
Find Top Genes by Cell | top_genes |
UI | ui |