Package: SeuratExplorer 0.1.0

SeuratExplorer: An 'Shiny' App for Exploring scRNA-seq Data Processed in 'Seurat'

A simple, one-command package which runs an interactive dashboard capable of common visualizations for single cell RNA-seq. 'SeuratExplorer' requires a processed 'Seurat' object, which is saved as 'rds' or 'qs2' file.

Authors:Yongchao Zhang [aut, cre]

SeuratExplorer_0.1.0.tar.gz
SeuratExplorer_0.1.0.zip(r-4.5)SeuratExplorer_0.1.0.zip(r-4.4)SeuratExplorer_0.1.0.zip(r-4.3)
SeuratExplorer_0.1.0.tgz(r-4.5-any)SeuratExplorer_0.1.0.tgz(r-4.4-any)SeuratExplorer_0.1.0.tgz(r-4.3-any)
SeuratExplorer_0.1.0.tar.gz(r-4.5-noble)SeuratExplorer_0.1.0.tar.gz(r-4.4-noble)
SeuratExplorer_0.1.0.tgz(r-4.4-emscripten)
SeuratExplorer.pdf |SeuratExplorer.html✨
SeuratExplorer/json (API)

# Install 'SeuratExplorer' in R:
install.packages('SeuratExplorer', repos = c('https://fentouxungui.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/fentouxungui/seuratexplorer/issues

On CRAN:

Conda:

3.90 score 9 exports 171 dependencies

Last updated 1 days agofrom:b405227a17. Checks:9 OK. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 14 2025
R-4.5-winOKMar 14 2025
R-4.5-macOKMar 14 2025
R-4.5-linuxOKMar 14 2025
R-4.4-winOKMar 14 2025
R-4.4-macOKMar 14 2025
R-4.4-linuxOKMar 14 2025
R-4.3-winOKMar 14 2025
R-4.3-macOKMar 14 2025

Exports:cellRatioPlotexplorer_body_uiexplorer_serverexplorer_sidebar_uigetColorslaunchSeuratExplorerservertop_genesui

Dependencies:abindaskpassbase64encBHBiocGenericsbitopsbslibcachemcaToolscirclizecliclueclustercodetoolscolorspacecolourpickercommonmarkComplexHeatmapcowplotcpp11crayoncrosstalkcurldata.tabledeldirdigestdoParalleldotCall64dplyrdqrngDTevaluatefansifarverfastDummiesfastmapfitdistrplusFNNfontawesomeforeachfsfuturefuture.applygenericsGetoptLongggalluvialggplot2ggrepelggridgesGlobalOptionsglobalsgluegoftestgplotsgridExtragtablegtoolsherehighrhtmltoolshtmlwidgetshttpuvhttricaigraphIRangesirlbaisobanditeratorsjquerylibjsonliteKernSmoothknitrlabelinglaterlatticelazyevalleidenbaselifecyclelistenvlmtestmagrittrMASSMatrixmatrixStatsmemoisemgcvmimeminiUImunsellnlmeopensslparallellypatchworkpbapplypillarpkgconfigplotlyplyrpngpolyclipprogressrpromisespurrrqs2R6RANNrappdirsRColorBrewerRcppRcppAnnoyRcppArmadilloRcppEigenRcppHNSWRcppParallelRcppProgressRcppTOMLreshape2reticulaterjsonrlangrmarkdownROCRrprojrootRSpectraRtsneS4VectorssassscalesscattermoresctransformSeuratSeuratObjectshapeshinyshinyBSshinycssloadersshinydashboardshinyjquishinyjsshinyWidgetssitmosourcetoolsspspamspatstat.dataspatstat.explorespatstat.geomspatstat.randomspatstat.sparsespatstat.univarspatstat.utilsstringfishstringistringrsurvivalsystensortibbletidyrtidyselecttinytexutf8uwotvctrsviridisLitewithrxfunxtableyamlzoo